A comprehensive suite of tools for high quality genome assembly.

The advent of NGS gave the possibility to sequence novel genomes at reasonable costs.
ScaMPI is a suite of tools to assist genome scaffolding and finishing using Mate Paired (or Paired End) information,
and thanks to it web based interface allows data retrieval and live collaboration to people involved in the project.

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News and Updates

ScaMPI's blog features updates and tutorials. Enter and browse.

Try

You can try the web interface of ScaMPI from your browser right now. Some tools are disabled.

Learn

The online manual is the latest release available of the documentation. Features step-by-step tutorials.

Download

You can download the package with ScaMPI scripts and web interface. The SourceForce page is coming...

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Interface

ScaMPI most appreciated feature is a graphical interface accessible by any web browser. This makes data available for non bioinformatician coworkers.

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Scaffolding

ScaMPI features a simple and fast scaffolding procedure. From reads to scaffold in about 1 day.

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Validation

We love well done genomes as much as you do. This is why we developed a pipeline for validation via BAC-ends sequencing.

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Telomeres

TRAP, a telomere identification pipeline, allows marking scaffolds as chromosome ends.

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