Category Archives: Bioinformatics

PASS-BIS: A novel aligner for methylome studies

We recently published and released PASS-BIS, a modified version of the PASS aligner to enable fast and efficient bisulfite-treated reads mapping, both in color-space and in base-space. The article is online, and the PASS-BIS package is freely available for download.

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QueryOR

QueryOR is a web-based query platform that aggregates several functional annotation of variants and genes for giving valuable prioritization criteria to reduce the search space of analysis. The prioritization strategy consist in a ranking system that sorts results based on the … Continue reading

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ScaMPI: a user friendly framework for genome assembly

We are proud to release the ScaMPI suite (Scaffolding with Mate Pair Information). ScaMPI is a web based, and user friendly, framework to assist the scaffolding process, and even provide a module for automatic scaffolding.

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